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HCI for Web-based development of interactive medical mulitmedia courseware - lessons learned: SIGBIO Newsl., Vol. 20, No. 1. (April 2000), pp. 4-7.Bill Janvier

Source: SIGBIO Newsl., Vol. 20, No. 1. (April 2000), pp. 4-7.
SparTag.us: a low cost tagging system for foraging of web content: (2008), pp. 65-72.Tagging systems such as del.icio.us and Diigo have become important ways for users to organize information gathered from the Web. However, despite their popularity among early adopters, tagging still incurs a relatively high interaction cost for the general users. We introduce a new tagging system called SparTag.us, which uses an intuitive Click2Tag technique to provide in situ, low cost tagging of web content. SparTag.us also lets users highlight text snippets and automatically collects tagged or highlighted paragraphs into a system-created notebook, which can be later browsed and searched. We report several user studies aimed at evaluating Click2Tag and SparTag.us.Lic han Hong, Ed Chi, Raluca Budiu, Peter Pirolli, Les Nelson

Source: (2008), pp. 65-72.
A Web Browser for Ajax Approach with Asynchronous Communication Model: Web Intelligence, 2006. WI 2006. IEEE/WIC/ACM International Conference on (2006), pp. 808-814.We can receive large information from various Web sites using the Internet. The Web sites are important means to collect the required information in researching, learning, and even in commerce activities. Importance of Web browsers grows increasingly as Web sites increase. Web browsers are powerful tools to refer to Web sites. However, due to necessary of synchronous communication with Web servers, operationality of Web pages on Web browser is not better than operationality of desktop applications. Therefore, we propose a new Web browser for Ajax approach with asynchronous communication model. Our Web browser can improve the operationality that is equivalent to the operationality of desktop applications without revising program codes of the Web applications. A feature of the browser is partial updating of a Web page even if the Web application does not adopt Ajax approach. As a result of experiments, we have confirmed improvement of operationality of "Yahoo auction sites" on our Web browser when the load of the Web server increasesN Hanakawa, N Ikemiya

Source: Web Intelligence, 2006. WI 2006. IEEE/WIC/ACM International Conference on (2006), pp. 808-814.
Firefox Hacks: Tips & Tools for Next-Generatio n Web Browsing (Hacks): (22 March 2005)Firefox Hacks is ideal for power users who want to take full advantage of Firefox from Mozilla, the next-generatio n web browser that is rapidly subverting Internet Explorer's once-dominant audience. It's also the first book that specifically dedicates itself to this technology. Firefox is winning such widespread approval for a number of reasons, including the fact that it lets users browse faster and more efficiently. Perhaps its most appealing strength, though, is its increased security something that is covered in great detail in Firefox Hacks. Clearly the web browser of the future, Firefox includes most of the features that browser users are familiar with, along with several new features, such as a bookmarks toolbar and tabbed pages that allow users to quickly switch among several web sites. Firefox Hacks offers all the valuable tips and tools you need to maximize the effectiveness of this hot web application. It's all covered, including how to customize its deployment, appearance, features, and functionality. You'll even learn how to install, use, and alter extensions and plug-ins. Aimed at clever people who may or may not be capable of Family of programming languages. Available variations include Visual Ba ...'>basic programming tasks, this convenient resource describes 100 techniques for 100 strategies that effectively exploit Firefox. Or, put another way, readers of every stripe will find all the user-friendly tips, tools, and tricks they need to make a productive switch to Firefox. With Firefox Hacks, a superior and safer browsing experience is truly only pages away. The latest in O'Reilly's celebrated Hacks series, Firefox Hacks smartly complements other web-applicatio n titles such as Google Hacks and PayPal Hacks. Nigel Mcfarlane

Source: (22 March 2005)
Supporting Sociability in a Shared Browser: The present paper explores the importance of designing shared browsing user interfaces to support sociability. In particular, several shared browsing interfaces were empirically tested for the extent to which they helped people achieve a sense of shared understanding- -or common ground--while surfing the web. We found a) that people generally preferred a shared browser to an unshared browser when shopping online together, and b) that user interface features that enhanced common ground had a...Shelly Farnham, Melora Zaner, Lili Cheng
W4: a World Wide Web browser with CSCW support: Computer-Human Interaction, 1996. Proceedings., Sixth Australian Conference on (1996), pp. 334-335.There has been much recent interest in using the World Wide Web to facilitate distributed cooperative work. Unfortunately, most existing Internet tools do not provide adequate cooperative work support to make this possible. This short paper describes how a simple Web browser was extended to support a range of CSCW facilities, including telepointers, group awareness widgets, text chats, collaborative notes, messages and URL annotations, and collaborative editorsS Gianoutsos

Source: Computer-Human Interaction, 1996. Proceedings., Sixth Australian Conference on (1996), pp. 334-335.
Bluejay 1.0: genome browsing and comparison with rich customization provision and dynamic resource linking: BMC Bioinformatics , Vol. 9, No. 1. (2008)BACKGROU ND:The Bluejay genome browser has been developed over several years to address the challenges posed by the ever increasing number of data types as well as the increasing volume of data in genome research. Beginning with a browser capable of rendering views of XML-based genomic information and providing scalable vector graphics output, we have now completed version 1.0 of the system with many additional features. Our development efforts were guided by our observation that biologists who use both gene expression profiling and comparative genomics gain functional insights above and beyond those provided by traditional per-gene analyses.RESUL TS:Bluejay 1.0 is a genome viewer integrating genome annotation with: (i) gene expression information; and (ii) comparative analysis with an unlimited number of other genomes in the same view. This allows the biologist to see a gene not just in the context of its genome, but also its regulation and its evolution. Bluejay now has rich provision for personalizatio n by users: (i) numerous display customization features; (ii) the availability of GPS-style waypoints for marking multiple points of interest on a genome and subsequently utilizing them; and (iii) the ability to take user relevance feedback of annotated genes or textual items to offer personalized recommendation s. Bluejay 1.0 also embeds the Seahawk browser for the Moby protocol, enabling users to seamlessly invoke hundreds of Web Services on genomic data of interest without any hard-coding.CO NCLUSIONS:Blue jay offers a unique set of customizable genome-browsin g features, with the goal of allowing biologists to quickly focus on, analyze, compare, and retrieve related information on the parts of the genomic data they are most interested in. We expect these capabilities of Bluejay to benefit the many biologists who want to answer complex questions using the information available from completely sequenced genomes.Jung Soh, Paul Gordon, Morgan Taschuk, Anguo Dong, Andrew Seng, Andrei Turinsky, Christoph Sensen

Source: BMC Bioinformatics, Vol. 9, No. 1. (2008)
JCoast - A biologist-cent ric software tool for data mining and comparison of prokaryotic (meta)genomes: BMC Bioinformatics , Vol. 9 (01 April 2008), 177.Michael Richter, Thierry Lombardot, Ivaylo Kostadinov, Renzo Kottmann, Melissa Duhaime, Jorg Peplies, Frank Glockner

Source: BMC Bioinformatics, Vol. 9 (01 April 2008), 177.
Gbrowse Moby: a Web-based browser for BioMoby Services.: Source Code Biol Med, Vol. 1 (2006)BACKGROU ND: The BioMoby project aims to identify and deploy standards and conventions that aid in the discovery, execution, and pipelining of distributed bioinformatics Web Services. As of August, 2006, approximately 680 bioinformatics resources were available through the BioMoby interoperabili ty platform. There are a variety of clients that can interact with BioMoby-style services. Here we describe a Web-based browser-style client--Gbrows e Moby--that allows users to discover and "surf" from one bioinformatics service to the next using a semantically-a ided browsing interface. RESULTS: Gbrowse Moby is a low-throughput , exploratory tool specifically aimed at non-informatic ians. It provides a straightforwar d, minimal interface that enables a researcher to query the BioMoby Central web service registry for data retrieval or analytical tools of interest, and then select and execute their chosen tool with a single mouse-click. The data is preserved at each step, thus allowing the researcher to manually "click" the data from one service to the next, with the Gbrowse Moby application managing all data formatting and interface interpretation on their behalf. The path of manual exploration is preserved and can be downloaded for import into automated, high-throughpu t tools such as Taverna. Gbrowse Moby also includes a robust data rendering system to ensure that all new data-types that appear in the BioMoby registry can be properly displayed in the Web interface. CONCLUSION: Gbrowse Moby is a robust, yet facile entry point for both newcomers to the BioMoby interoperabili ty project who wish to manually explore what is known about their data of interest, as well as experienced users who wish to observe the functionality of their analytical workflows prior to running them in a high-throughpu t environment.M Wilkinson

Source: Source Code Biol Med, Vol. 1 (2006)
The generic genome browser: a building block for a model organism system database.: Genome Res, Vol. 12, No. 10. (October 2002), pp. 1599-1610.The Generic Model Organism System Database Project (GMOD) seeks to develop reusable software components for model organism system databases. In this paper we describe the Generic Genome Browser (GBrowse), a Web-based application for displaying genomic annotations and other features. For the end user, features of the browser include the ability to scroll and zoom through arbitrary regions of a genome, to enter a region of the genome by searching for a landmark or performing a full text search of all features, and the ability to enable and disable tracks and change their relative order and appearance. The user can upload private annotations to view them in the context of the public ones, and publish those annotations to the community. For the data provider, features of the browser software include reliance on readily available open source components, simple installation, flexible configuration, and easy integration with other components of a model organism system Web site. GBrowse is freely available under an open source license. The software, its documentation, and support are available at http://www.gmo d.org.LD Stein, C Mungall, S Shu, M Caudy, M Mangone, A Day, E Nickerson, JE Stajich, TW Harris, A Arva, S Lewis

Source: Genome Res, Vol. 12, No. 10. (October 2002), pp. 1599-1610.

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